Last updated on June 03, 2013

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I. DNA amplification

Kit

GE:illustra GenomiPhi V2 DNA Amplification Kit

II. PCR

Primer details

Exon No. Forward sequence Reverse sequence Expected PCR
product size (bp)
Genomic regions amplified by
ePCR with the primer
 1   CCTTTGCACTCAAATTCCTCC   AACCGACGAGTTCAAACCAC    534     chr6:137540187-137540720 
 2   TACATATCTGGGCAATGTGGC   GGAAGGCTGATGAAAGAACAC    300     chr6:137528011-137528310 
 3   GCAAAGCACAGACAGAAATGG   ACTGACTCTAAATTCCTCCAAGTG    385     chr6:137527138-137527522 
 4   GGTCCTGCTTTAGAACAACCAG   TCAAATCTATGATCTGTGAGTCTTGC    424     chr6:137525343-137525766 
 5   TGTTTGACCAGGACTAATATGGTG   TTTGCTTTCCTCACATGATCC    347     chr6:137524563-137524909 
 6   TCAGATTTCCTAACTTCTGCTTCC   GACTGATTGATGGCAGGTGAC    406     chr6:137521895-137522300 
 7a   AAATGTGCCATTTGGTGGTC   CGGTTATGAGCTCTTGTCCTTC    585     chr6:137519296-137519880 
 7b   GGCAGCATCGCTTTAAACTC   TGCCACACATCCTCTTTACGCT    461     chr6:137519010-137519470 

III. Sequencing reaction

Kit

BigDye® Terminator v3.1 Cycle Sequencing Kit

Primer details

Exon No. Forward sequence Reverse sequence Expected PCR
product size (bp)
Genomic regions amplified by
ePCR with the primer
 1   CCTTTGCACTCAAATTCCTCC   AACCGACGAGTTCAAACCAC    534    chr6:137540187-137540720 
 2   TACATATCTGGGCAATGTGGC   GGAAGGCTGATGAAAGAACAC    300    chr6:137528011-137528310 
 3   GCAAAGCACAGACAGAAATGG   ACTGACTCTAAATTCCTCCAAGTG    385    chr6:137527138-137527522 
 4   GGTCCTGCTTTAGAACAACCAG   TCAAATCTATGATCTGTGAGTCTTGC    424    chr6:137525343-137525766 
 5   CAGATTAAAAGAAGCTGTGCA   TTTGCTTTCCTCACATGATCC    308    chr6:137524563-137524870 
 6   AAACTCTGGCCCTATTCACT   CATCTTGTTGAATATCATTC    348    chr6:137521915-137522262 
 7a   AAATGTGCCATTTGGTGGTC   CGGTTATGAGCTCTTGTCCTTC    585    chr6:137519296-137519880 
 7b   GGCAGCATCGCTTTAAACTC   TGCCACACATCCTCTTTACGCT    461    chr6:137519010-137519470 

IV. Ethanol precipitation

V. Sequencing analysis

   

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