Last updated on May 20, 2013

 RSS 2.0

 E-alerts

Home
Query
Browse
DNA Sequencing
Browse
PID Expert
statistics
PhenomeR
SciNetS
 
 STAT3

Click on each title for more information

I. DNA amplification

Kit

GE:illustra GenomiPhi V2 DNA Amplification Kit

II. PCR

Primer details

Exon No. Forward sequence Reverse sequence Expected PCR
product size (bp)
Genomic regions amplified by
ePCR with the primer
 2   CCTACTGGGACTTGTGGTGAAC   TCATGTCTCTTGACTCAAACTGAAAC    256     chr17:40500346-40500601 
 3   GCAAGAAGAATCTAACATGATGAATG   TCAGGTAATGATGCTCACGG    479     chr17:40498399-40498877 
 4   GGTGCCACAGTTCAGTCCAC   ACCATTGGGTCTGTTGGATTC    405     chr17:40497341-40497745 
 5   GGTAGTTAGGGTGGGATGGAAG   CCTGAGTGGCAGAGCAAGAC    270     chr17:40491246-40491515 
 6   AACAGGGAGCCTTCTCTTGG   ATGACCAGGCTCCTTTGAGG    382     chr17:40490606-40490987 
 7   GAGTCAAGGAGGCAAGTGAATATTAG   AACCAAGCAAGTTCTGCCAC    1063     chr17:40489697-40490759 
 8   GAAGTTCCTGCTCTGGAGTTG   AGTACCAATTCTGTGGGCCTG    324     chr17:40489368-40489691 
 9   GTGGTCTCCATGTCTTCAGTATTTC   CCCGCCTCTCACTCTACCAC    327     chr17:40485835-40486161 
 10   TCACGTGGTAGAGTGAGAGGC   CACCTGGAAAGAATGACCCTG    264     chr17:40485595-40485858 
 11   GACAGCTTGGCCTATTTACCTG   TGACAATGCACCCCAAGGCT    327     chr17:40483340-40483666 
 12-13   AGTAAATAACAGGTGGTCAAAGTAGG   AAAGGCAGGTGTCCTGTGAG    385     chr17:40481490-40481874 
 14   CACTTGGTATGTGGGAGGAGC   GAACAGGTTGATGTTTCTAATTCTGG    252     chr17:40481326-40481577 
 15   TGCTGCTTAGACTGGTCTCG   CAGTAATCATTCCACCTTCTCTTG    309     chr17:40478034-40478342 
 16   ATGTCCTTTCATTCTGAGCCC   TGTTTAGATGAGGGATGGTGC    292     chr17:40476888-40477179 
 17   CCTAGTATAGACAATGAGCACCATCC   TCAGTAGACATGGCCCAAATG    286     chr17:40476640-40476925 
 18   CCATTGTGGGATGAATGTGTG   ACCAAGAGTTCAGGGCCTTC    242     chr17:40475498-40475739 
 19   GTAGACGGGCCTGAGGATTTG   ATTGCTAACAGGGCATCCATC    279     chr17:40475192-40475470 
 20   TGCACAGATGTAACCAAGTCC   TGCTTGCAACTAGAAGCAGTG    311     chr17:40474950-40475260 
 21   GAACAGGGTGTTCAGGGTCTC   CCCAGGTTATTCAGGCATTTG    447     chr17:40474201-40474647 
 22   GCTTCCTCCAGCTCTGCTTAC   GTCCCATTCCCAGGGATAAC    179     chr17:40469133-40469311 
 23   TTCCATTGTGTCTTGTCAACC   CCAACTTCCCTTATAGGGACAAAG    215     chr17:40468763-40468977 
 24a   TGGATAGCAGTGGTAGCCTGG   GATCACCCACATTCACTCATTTC    360     chr17:40467566-40467925 

III. Sequencing reaction

Kit

BigDye® Terminator v3.1 Cycle Sequencing Kit

Primer details

Exon No. Forward sequence Reverse sequence Expected PCR
product size (bp)
Genomic regions amplified by
ePCR with the primer
 2   CCTACTGGGACTTGTGGTGAAC   TCATGTCTCTTGACTCAAACTGAAAC    256    chr17:40500346-40500601 
 3   GCAAGAAGAATCTAACATGATGAATG   TCAGGTAATGATGCTCACGG    479    chr17:40498399-40498877 
 4   GGTGCCACAGTTCAGTCCAC   GATTTTCCATTCCTCCCAGA    218    chr17:40497528-40497745 
 5   GGTAGTTAGGGTGGGATGGAAG   AATTAATGAAAGCTCCCTGCC    227    chr17:40491289-40491515 
 6   AACAGGGAGCCTTCTCTTGG   ATGACCAGGCTCCTTTGAGG    382    chr17:40490606-40490987 
 7   AAGGAGTTTTTTCTTCCTTCGC   AACCAAGCAAGTTCTGCCAC    203    chr17:40489697-40489899 
 8   GAAGTTCCTGCTCTGGAGTTG   AGTACCAATTCTGTGGGCCTG    324    chr17:40489368-40489691 
 9   GTGGTCTCCATGTCTTCAGTATTTC   CCCGCCTCTCACTCTACCAC    327    chr17:40485835-40486161 
 10   TCACGTGGTAGAGTGAGAGGC   CACCTGGAAAGAATGACCCTG    264    chr17:40485595-40485858 
 11   GACAGCTTGGCCTATTTACCTG   TGACAATGCACCCCAAGGCT    327    chr17:40483340-40483666 
 12-13   AGTAAATAACAGGTGGTCAAAGTAGG   AAAGGCAGGTGTCCTGTGAG    385    chr17:40481490-40481874 
 14   CACTTGGTATGTGGGAGGAGC   GAACAGGTTGATGTTTCTAATTCTGG    252    chr17:40481326-40481577 
 15   TGCTGCTTAGACTGGTCTCG   CAGTAATCATTCCACCTTCTCTTG    309    chr17:40478034-40478342 
 16   ATGTCCTTTCATTCTGAGCCC   TGTTTAGATGAGGGATGGTGC    292    chr17:40476888-40477179 
 17   CCTAGTATAGACAATGAGCACCATCC   TCAGTAGACATGGCCCAAATG    286    chr17:40476640-40476925 
 18   CCATTGTGGGATGAATGTGTG   ACCAAGAGTTCAGGGCCTTC    242    chr17:40475498-40475739 
 19   GTAGACGGGCCTGAGGATTTG   ATTGCTAACAGGGCATCCATC    279    chr17:40475192-40475470 
 20   TGCACAGATGTAACCAAGTCC   TGCTTGCAACTAGAAGCAGTG    311    chr17:40474950-40475260 
 21   GAACAGGGTGTTCAGGGTCTC   CCCAGGTTATTCAGGCATTTG    447    chr17:40474201-40474647 
 22   GCTTCCTCCAGCTCTGCTTAC   GTCCCATTCCCAGGGATAAC    179    chr17:40469133-40469311 
 23   TTCCATTGTGTCTTGTCAACC   CCAACTTCCCTTATAGGGACAAAG    215    chr17:40468763-40468977 
 24a   TGGATAGCAGTGGTAGCCTGG   GATCACCCACATTCACTCATTTC    360    chr17:40467566-40467925 

IV. Ethanol precipitation

V. Sequencing analysis

   

  Unique visitors: 21266
  (since May 2009)
  Users online:  1

This is a joint Project between RIKEN, Japan and Institute of Bioinformatics, India.

Comments/Help  Disclaimer